Files

• AUTHORS
• Dockerfile
• GPL-LICENSE
• INSTALL
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README
• README.md
• bin/download_fasta_database
• bin/download_mlst_databases
• bin/get_emm_sequence_type
• bin/get_sequence_type
• dist.ini
• install_dependencies.sh
• lib/Bio/MLST/Blast/BlastN.pm
• lib/Bio/MLST/Blast/Database.pm
• lib/Bio/MLST/CDC/Convert.pm
• lib/Bio/MLST/Check.pm
• lib/Bio/MLST/CheckMultipleSpecies.pm
• lib/Bio/MLST/CompareAlleles.pm
• lib/Bio/MLST/DatabaseSettings.pm
• lib/Bio/MLST/Databases.pm
• lib/Bio/MLST/Download/Database.pm
• lib/Bio/MLST/Download/Databases.pm
• lib/Bio/MLST/Download/Downloadable.pm
• lib/Bio/MLST/FilterAlleles.pm
• lib/Bio/MLST/NormaliseFasta.pm
• lib/Bio/MLST/OutputFasta.pm
• lib/Bio/MLST/ProcessFasta.pm
• lib/Bio/MLST/SearchForFiles.pm
• lib/Bio/MLST/SequenceType.pm
• lib/Bio/MLST/Spreadsheet/File.pm
• lib/Bio/MLST/Spreadsheet/Row.pm
• lib/Bio/MLST/Types.pm
• lib/Bio/MLST/Validate/Executable.pm
• lib/Bio/MLST/Validate/File.pm
• lib/Bio/MLST/Validate/Resource.pm
• mlst_dbs/Achromobacter_spp/alleles/eno.tfa
• mlst_dbs/Achromobacter_spp/alleles/gltB.tfa
• mlst_dbs/Achromobacter_spp/alleles/lepA.tfa
• mlst_dbs/Achromobacter_spp/alleles/nrdA.tfa
• mlst_dbs/Achromobacter_spp/alleles/nuoL.tfa
• mlst_dbs/Achromobacter_spp/alleles/nusA.tfa
• mlst_dbs/Achromobacter_spp/alleles/rpoB.tfa
• mlst_dbs/Achromobacter_spp/profiles/achromobacter.txt
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_cpn60.tfa
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_gdhB.tfa
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_gltA.tfa
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_gpi.tfa
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_gyrB.tfa
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_recA.tfa
• mlst_dbs/Acinetobacter_baumannii_1/alleles/Oxf_rpoD.tfa
• mlst_dbs/Acinetobacter_baumannii_1/profiles/abaumannii.txt
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_cpn60.tfa
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_fusA.tfa
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_gltA.tfa
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_pyrG.tfa
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_recA.tfa
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_rplB.tfa
• mlst_dbs/Acinetobacter_baumannii_2/alleles/Pas_rpoB.tfa
• mlst_dbs/Acinetobacter_baumannii_2/profiles/abaumannii_2.txt
• mlst_dbs/Aeromonas_spp/alleles/gltA.tfa
• mlst_dbs/Aeromonas_spp/alleles/groL.tfa
• mlst_dbs/Aeromonas_spp/alleles/gyrB.tfa
• mlst_dbs/Aeromonas_spp/alleles/metG.tfa
• mlst_dbs/Aeromonas_spp/alleles/ppsA.tfa
• mlst_dbs/Aeromonas_spp/alleles/recA.tfa
• mlst_dbs/Aeromonas_spp/profiles/aeromonas.txt
• mlst_dbs/Anaplasma_phagocytophilum/alleles/atpA.tfa
• mlst_dbs/Anaplasma_phagocytophilum/alleles/dnaN.tfa
• mlst_dbs/Anaplasma_phagocytophilum/alleles/fumC.tfa
• mlst_dbs/Anaplasma_phagocytophilum/alleles/glyA.tfa
• mlst_dbs/Anaplasma_phagocytophilum/alleles/mdh.tfa
• mlst_dbs/Anaplasma_phagocytophilum/alleles/pheS.tfa
• mlst_dbs/Anaplasma_phagocytophilum/alleles/sucA.tfa
• mlst_dbs/Anaplasma_phagocytophilum/profiles/aphagocytophilum.txt
• mlst_dbs/Arcobacter_spp/alleles/aspA.tfa
• mlst_dbs/Arcobacter_spp/alleles/atpA.tfa
• mlst_dbs/Arcobacter_spp/alleles/glnA.tfa
• mlst_dbs/Arcobacter_spp/alleles/gltA.tfa
• mlst_dbs/Arcobacter_spp/alleles/glyA.tfa
• mlst_dbs/Arcobacter_spp/alleles/pgm.tfa
• mlst_dbs/Arcobacter_spp/alleles/tkt.tfa
• mlst_dbs/Arcobacter_spp/profiles/arcobacter.txt
• mlst_dbs/Aspergillus_fumigatus/alleles/ANX4.tfa
• mlst_dbs/Aspergillus_fumigatus/alleles/BGT1.tfa
• mlst_dbs/Aspergillus_fumigatus/alleles/CAT1.tfa
• mlst_dbs/Aspergillus_fumigatus/alleles/LIP.tfa
• mlst_dbs/Aspergillus_fumigatus/alleles/MAT1_2.tfa
• mlst_dbs/Aspergillus_fumigatus/alleles/SODB.tfa
• mlst_dbs/Aspergillus_fumigatus/alleles/ZRF2.tfa
• mlst_dbs/Aspergillus_fumigatus/profiles/afumigatus.txt
• mlst_dbs/Bacillus_cereus/alleles/glp.tfa
• mlst_dbs/Bacillus_cereus/alleles/gmk.tfa
• mlst_dbs/Bacillus_cereus/alleles/ilv.tfa
• mlst_dbs/Bacillus_cereus/alleles/pta.tfa
• mlst_dbs/Bacillus_cereus/alleles/pur.tfa
• mlst_dbs/Bacillus_cereus/alleles/pyc.tfa
• mlst_dbs/Bacillus_cereus/alleles/tpi.tfa
• mlst_dbs/Bacillus_cereus/profiles/bcereus.txt
• mlst_dbs/Bacillus_licheniformis/alleles/adk.tfa
• mlst_dbs/Bacillus_licheniformis/alleles/ccpA.tfa
• mlst_dbs/Bacillus_licheniformis/alleles/recF.tfa
• mlst_dbs/Bacillus_licheniformis/alleles/rpoB.tfa
• mlst_dbs/Bacillus_licheniformis/alleles/spo0A.tfa
• mlst_dbs/Bacillus_licheniformis/alleles/sucC.tfa
• mlst_dbs/Bacillus_licheniformis/profiles/blicheniformis.txt
• mlst_dbs/Bacillus_subtilis/alleles/glpF.tfa
• mlst_dbs/Bacillus_subtilis/alleles/ilvD.tfa
• mlst_dbs/Bacillus_subtilis/alleles/pta.tfa
• mlst_dbs/Bacillus_subtilis/alleles/purH.tfa
• mlst_dbs/Bacillus_subtilis/alleles/pycA.tfa
• mlst_dbs/Bacillus_subtilis/alleles/rpoD.tfa
• mlst_dbs/Bacillus_subtilis/alleles/tpiA.tfa
• mlst_dbs/Bacillus_subtilis/profiles/bsubtilis.txt
• mlst_dbs/Bartonella_henselae/alleles/_16S.tfa
• mlst_dbs/Bartonella_henselae/alleles/batR.tfa
• mlst_dbs/Bartonella_henselae/alleles/ftsZ.tfa
• mlst_dbs/Bartonella_henselae/alleles/gltA.tfa
• mlst_dbs/Bartonella_henselae/alleles/groEL.tfa
• mlst_dbs/Bartonella_henselae/alleles/nlpD.tfa
• mlst_dbs/Bartonella_henselae/alleles/ribC.tfa
• mlst_dbs/Bartonella_henselae/alleles/rpoB.tfa
• mlst_dbs/Bartonella_henselae/profiles/bhenselae.txt
• mlst_dbs/Bordetella_spp/alleles/adk.tfa
• mlst_dbs/Bordetella_spp/alleles/fumC.tfa
• mlst_dbs/Bordetella_spp/alleles/glyA.tfa
• mlst_dbs/Bordetella_spp/alleles/icd.tfa
• mlst_dbs/Bordetella_spp/alleles/pepA.tfa
• mlst_dbs/Bordetella_spp/alleles/pgm.tfa
• mlst_dbs/Bordetella_spp/alleles/tyrB.tfa
• mlst_dbs/Bordetella_spp/profiles/bordetella.txt
• mlst_dbs/Borrelia_spp/alleles/clpA.tfa
• mlst_dbs/Borrelia_spp/alleles/clpX.tfa
• mlst_dbs/Borrelia_spp/alleles/nifS.tfa
• mlst_dbs/Borrelia_spp/alleles/pepX.tfa
• mlst_dbs/Borrelia_spp/alleles/pyrG.tfa
• mlst_dbs/Borrelia_spp/alleles/recG.tfa
• mlst_dbs/Borrelia_spp/alleles/rplB.tfa
• mlst_dbs/Borrelia_spp/alleles/uvrA.tfa
• mlst_dbs/Borrelia_spp/profiles/borrelia.txt
• mlst_dbs/Brachyspira_hampsonii/alleles/Bha_adh.tfa
• mlst_dbs/Brachyspira_hampsonii/alleles/Bha_est.tfa
• mlst_dbs/Brachyspira_hampsonii/alleles/Bha_gdh.tfa
• mlst_dbs/Brachyspira_hampsonii/alleles/Bha_glpK.tfa
• mlst_dbs/Brachyspira_hampsonii/alleles/Bha_pgm.tfa
• mlst_dbs/Brachyspira_hampsonii/alleles/Bha_thi.tfa
• mlst_dbs/Brachyspira_hampsonii/profiles/bhampsonii.txt
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_adh.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_alp.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_est.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_gdh.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_glpK.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_pgm.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/alleles/Bhy_thi.tfa
• mlst_dbs/Brachyspira_hyodysenteriae/profiles/bhyodysenteriae.txt
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_adh.tfa
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_alp.tfa
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_est.tfa
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_gdh.tfa
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_glpK.tfa
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_pgm.tfa
• mlst_dbs/Brachyspira_intermedia/alleles/Bin_thi.tfa
• mlst_dbs/Brachyspira_intermedia/profiles/bintermedia.txt
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_adh.tfa
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_alp.tfa
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_est.tfa
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_gdh.tfa
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_glpK.tfa
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_pgm.tfa
• mlst_dbs/Brachyspira_pilosicoli/alleles/Bpi_thi.tfa
• mlst_dbs/Brachyspira_pilosicoli/profiles/bpilosicoli.txt
• mlst_dbs/Brachyspira_spp/alleles/Bra_adh.tfa
• mlst_dbs/Brachyspira_spp/alleles/Bra_alp.tfa
• mlst_dbs/Brachyspira_spp/alleles/Bra_est.tfa
• mlst_dbs/Brachyspira_spp/alleles/Bra_gdh.tfa
• mlst_dbs/Brachyspira_spp/alleles/Bra_glp.tfa
• mlst_dbs/Brachyspira_spp/alleles/Bra_pgm.tfa
• mlst_dbs/Brachyspira_spp/alleles/Bra_thi.tfa
• mlst_dbs/Brachyspira_spp/profiles/brachyspira.txt
• mlst_dbs/Burkholderia_cepacia_complex/alleles/atpD.tfa
• mlst_dbs/Burkholderia_cepacia_complex/alleles/gltB.tfa
• mlst_dbs/Burkholderia_cepacia_complex/alleles/gyrB.tfa
• mlst_dbs/Burkholderia_cepacia_complex/alleles/lepA.tfa
• mlst_dbs/Burkholderia_cepacia_complex/alleles/phaC.tfa
• mlst_dbs/Burkholderia_cepacia_complex/alleles/recA.tfa
• mlst_dbs/Burkholderia_cepacia_complex/alleles/trpB.tfa
• mlst_dbs/Burkholderia_cepacia_complex/profiles/bcc.txt
• mlst_dbs/Burkholderia_pseudomallei/alleles/ace.tfa
• mlst_dbs/Burkholderia_pseudomallei/alleles/gltB.tfa
• mlst_dbs/Burkholderia_pseudomallei/alleles/gmhD.tfa
• mlst_dbs/Burkholderia_pseudomallei/alleles/lepA.tfa
• mlst_dbs/Burkholderia_pseudomallei/alleles/lipA.tfa
• mlst_dbs/Burkholderia_pseudomallei/alleles/narK.tfa
• mlst_dbs/Burkholderia_pseudomallei/alleles/ndh.tfa
• mlst_dbs/Burkholderia_pseudomallei/profiles/bpseudomallei.txt
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_aspA.tfa
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_atpA.tfa
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_glnA.tfa
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_gltA.tfa
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_glyA.tfa
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_ilvD.tfa
• mlst_dbs/Campylobacter_concisus_curvus/alleles/Cco_pgm.tfa
• mlst_dbs/Campylobacter_concisus_curvus/profiles/cconcisus.txt
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_aspA.tfa
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_glnA.tfa
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_gltA.tfa
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_glyA.tfa
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_pgm.tfa
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_tkt.tfa
• mlst_dbs/Campylobacter_fetus/alleles/Cfe_uncA.tfa
• mlst_dbs/Campylobacter_fetus/profiles/cfetus.txt
• mlst_dbs/Campylobacter_helveticus/alleles/Che_aspA.tfa
• mlst_dbs/Campylobacter_helveticus/alleles/Che_atpA.tfa
• mlst_dbs/Campylobacter_helveticus/alleles/Che_glnA.tfa
• mlst_dbs/Campylobacter_helveticus/alleles/Che_gltA.tfa
• mlst_dbs/Campylobacter_helveticus/alleles/Che_glyA.tfa
• mlst_dbs/Campylobacter_helveticus/alleles/Che_pgm.tfa
• mlst_dbs/Campylobacter_helveticus/alleles/Che_tkt.tfa
• mlst_dbs/Campylobacter_helveticus/profiles/chelveticus.txt
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_aspA.tfa
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_atpA.tfa
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_glnA.tfa
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_gltA.tfa
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_glyA.tfa
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_pgm.tfa
• mlst_dbs/Campylobacter_hyointestinalis/alleles/Chy_tkt.tfa
• mlst_dbs/Campylobacter_hyointestinalis/profiles/chyointestinalis.txt
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_aspA.tfa
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_atpA.tfa
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_glnA.tfa
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_glyA.tfa
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_pgi.tfa
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_pgm.tfa
• mlst_dbs/Campylobacter_insulaenigrae/alleles/Cin_tkt.tfa
• mlst_dbs/Campylobacter_insulaenigrae/profiles/cinsulaenigrae.txt
• mlst_dbs/Campylobacter_jejuni/alleles/aspA.tfa
• mlst_dbs/Campylobacter_jejuni/alleles/glnA.tfa
• mlst_dbs/Campylobacter_jejuni/alleles/gltA.tfa
• mlst_dbs/Campylobacter_jejuni/alleles/glyA.tfa
• mlst_dbs/Campylobacter_jejuni/alleles/pgm.tfa
• mlst_dbs/Campylobacter_jejuni/alleles/tkt.tfa
• mlst_dbs/Campylobacter_jejuni/alleles/uncA.tfa
• mlst_dbs/Campylobacter_jejuni/profiles/campylobacter.txt
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_aspA.tfa
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_atpA.tfa
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_glnA.tfa
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_gltA.tfa
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_glyA.tfa
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_pgm.tfa
• mlst_dbs/Campylobacter_lanienae/alleles/Cln_tkt.tfa
• mlst_dbs/Campylobacter_lanienae/profiles/clanienae.txt
• mlst_dbs/Campylobacter_lari/alleles/Cla_adk.tfa
• mlst_dbs/Campylobacter_lari/alleles/Cla_atpA.tfa
• mlst_dbs/Campylobacter_lari/alleles/Cla_glnA.tfa
• mlst_dbs/Campylobacter_lari/alleles/Cla_glyA.tfa
• mlst_dbs/Campylobacter_lari/alleles/Cla_pgi.tfa
• mlst_dbs/Campylobacter_lari/alleles/Cla_pgm.tfa
• mlst_dbs/Campylobacter_lari/alleles/Cla_tkt.tfa
• mlst_dbs/Campylobacter_lari/profiles/clari.txt
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_aspA.tfa
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_atpA.tfa
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_glnA.tfa
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_gltA.tfa
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_glyA.tfa
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_pgm.tfa
• mlst_dbs/Campylobacter_sputorum/alleles/Csp_tkt.tfa
• mlst_dbs/Campylobacter_sputorum/profiles/csputorum.txt
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_adk.tfa
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_aspA.tfa
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_atpA.tfa
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_glnA.tfa
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_glyA.tfa
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_pgi.tfa
• mlst_dbs/Campylobacter_upsaliensis/alleles/Cup_tkt.tfa
• mlst_dbs/Campylobacter_upsaliensis/profiles/cupsaliensis.txt
• mlst_dbs/Candida_albicans/alleles/AAT1a.tfa
• mlst_dbs/Candida_albicans/alleles/ACC1.tfa
• mlst_dbs/Candida_albicans/alleles/ADP1.tfa
• mlst_dbs/Candida_albicans/alleles/MPIb.tfa
• mlst_dbs/Candida_albicans/alleles/SYA1.tfa
• mlst_dbs/Candida_albicans/alleles/VPS13.tfa
• mlst_dbs/Candida_albicans/alleles/ZWF1b.tfa
• mlst_dbs/Candida_albicans/profiles/calbicans.txt
• mlst_dbs/Candida_glabrata/alleles/FKS.tfa
• mlst_dbs/Candida_glabrata/alleles/LEU2.tfa
• mlst_dbs/Candida_glabrata/alleles/NMT1.tfa
• mlst_dbs/Candida_glabrata/alleles/TRP1.tfa
• mlst_dbs/Candida_glabrata/alleles/UGP1.tfa
• mlst_dbs/Candida_glabrata/alleles/URA3.tfa
• mlst_dbs/Candida_glabrata/profiles/cglabrata.txt
• mlst_dbs/Candida_krusei/alleles/ADE2.tfa
• mlst_dbs/Candida_krusei/alleles/HIS3.tfa
• mlst_dbs/Candida_krusei/alleles/LEU2.tfa
• mlst_dbs/Candida_krusei/alleles/LYS2D.tfa
• mlst_dbs/Candida_krusei/alleles/NMT1.tfa
• mlst_dbs/Candida_krusei/alleles/TRP1.tfa
• mlst_dbs/Candida_krusei/profiles/ckrusei.txt
• mlst_dbs/Candida_tropicalis/alleles/ICL1.tfa
• mlst_dbs/Candida_tropicalis/alleles/MDR1.tfa
• mlst_dbs/Candida_tropicalis/alleles/SAPT2.tfa
• mlst_dbs/Candida_tropicalis/alleles/SAPT4.tfa
• mlst_dbs/Candida_tropicalis/alleles/XYR1.tfa
• mlst_dbs/Candida_tropicalis/alleles/ZWF1a.tfa
• mlst_dbs/Candida_tropicalis/profiles/ctropicalis.txt
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/dapE.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/ddlA.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/glpQ.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/ilvE.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/leuS.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/pyc.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/alleles/pyrE.tfa
• mlst_dbs/Carnobacterium_maltaromaticum/profiles/cmaltaromaticum.txt
• mlst_dbs/Chlamydiales_spp/alleles/enoA.tfa
• mlst_dbs/Chlamydiales_spp/alleles/fumC.tfa
• mlst_dbs/Chlamydiales_spp/alleles/gatA.tfa
• mlst_dbs/Chlamydiales_spp/alleles/gidA.tfa
• mlst_dbs/Chlamydiales_spp/alleles/hemN.tfa
• mlst_dbs/Chlamydiales_spp/alleles/hflX.tfa
• mlst_dbs/Chlamydiales_spp/alleles/oppA.tfa
• mlst_dbs/Chlamydiales_spp/profiles/chlamydiales.txt
• mlst_dbs/Citrobacter_freundii/alleles/arcA.tfa
• mlst_dbs/Citrobacter_freundii/alleles/aspC.tfa
• mlst_dbs/Citrobacter_freundii/alleles/clpX.tfa
• mlst_dbs/Citrobacter_freundii/alleles/dnaG.tfa
• mlst_dbs/Citrobacter_freundii/alleles/fadD.tfa
• mlst_dbs/Citrobacter_freundii/alleles/lysP.tfa
• mlst_dbs/Citrobacter_freundii/alleles/mdh.tfa
• mlst_dbs/Citrobacter_freundii/profiles/cfreundii.txt
• mlst_dbs/Clonorchis_sinensis/alleles/Actin.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Cox1.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Cox3.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Ef_1a.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Its1.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Nad4.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Nad5.tfa
• mlst_dbs/Clonorchis_sinensis/alleles/Tubulin.tfa
• mlst_dbs/Clonorchis_sinensis/profiles/csinensis.txt
• mlst_dbs/Clostridium_botulinum/alleles/aceK.tfa
• mlst_dbs/Clostridium_botulinum/alleles/aroE.tfa
• mlst_dbs/Clostridium_botulinum/alleles/hsp.tfa
• mlst_dbs/Clostridium_botulinum/alleles/mdh.tfa
• mlst_dbs/Clostridium_botulinum/alleles/oppB.tfa
• mlst_dbs/Clostridium_botulinum/alleles/recA.tfa
• mlst_dbs/Clostridium_botulinum/alleles/rpoB.tfa
• mlst_dbs/Clostridium_botulinum/profiles/cbotulinum.txt
• mlst_dbs/Clostridium_difficile/alleles/adk.tfa
• mlst_dbs/Clostridium_difficile/alleles/atpA.tfa
• mlst_dbs/Clostridium_difficile/alleles/dxr.tfa
• mlst_dbs/Clostridium_difficile/alleles/glyA.tfa
• mlst_dbs/Clostridium_difficile/alleles/recA.tfa
• mlst_dbs/Clostridium_difficile/alleles/sodA.tfa
• mlst_dbs/Clostridium_difficile/alleles/tpi.tfa
• mlst_dbs/Clostridium_difficile/profiles/cdifficile.txt
• mlst_dbs/Clostridium_septicum/alleles/ddl.tfa
• mlst_dbs/Clostridium_septicum/alleles/dnaK.tfa
• mlst_dbs/Clostridium_septicum/alleles/glpK.tfa
• mlst_dbs/Clostridium_septicum/alleles/groEL.tfa
• mlst_dbs/Clostridium_septicum/alleles/gyrA.tfa
• mlst_dbs/Clostridium_septicum/alleles/recA.tfa
• mlst_dbs/Clostridium_septicum/alleles/tpi.tfa
• mlst_dbs/Clostridium_septicum/profiles/csepticum.txt
• mlst_dbs/Corynebacterium_diphtheriae/alleles/atpA.tfa
• mlst_dbs/Corynebacterium_diphtheriae/alleles/dnaE.tfa
• mlst_dbs/Corynebacterium_diphtheriae/alleles/dnaK.tfa
• mlst_dbs/Corynebacterium_diphtheriae/alleles/fusA.tfa
• mlst_dbs/Corynebacterium_diphtheriae/alleles/leuA.tfa
• mlst_dbs/Corynebacterium_diphtheriae/alleles/odhA.tfa
• mlst_dbs/Corynebacterium_diphtheriae/alleles/rpoB.tfa
• mlst_dbs/Corynebacterium_diphtheriae/profiles/cdiphtheriae.txt
• mlst_dbs/Cronobacter_spp/alleles/atpD.tfa
• mlst_dbs/Cronobacter_spp/alleles/fusA.tfa
• mlst_dbs/Cronobacter_spp/alleles/glnS.tfa
• mlst_dbs/Cronobacter_spp/alleles/gltB.tfa
• mlst_dbs/Cronobacter_spp/alleles/gyrB.tfa
• mlst_dbs/Cronobacter_spp/alleles/infB.tfa
• mlst_dbs/Cronobacter_spp/alleles/pps.tfa
• mlst_dbs/Cronobacter_spp/profiles/cronobacter.txt
• mlst_dbs/Enterobacter_cloacae/alleles/dnaA.tfa
• mlst_dbs/Enterobacter_cloacae/alleles/fusA.tfa
• mlst_dbs/Enterobacter_cloacae/alleles/gyrB.tfa
• mlst_dbs/Enterobacter_cloacae/alleles/leuS.tfa
• mlst_dbs/Enterobacter_cloacae/alleles/pyrG.tfa
• mlst_dbs/Enterobacter_cloacae/alleles/rplB.tfa
• mlst_dbs/Enterobacter_cloacae/alleles/rpoB.tfa
• mlst_dbs/Enterobacter_cloacae/profiles/ecloacae.txt
• mlst_dbs/Enterococcus_faecalis/alleles/aroE.tfa
• mlst_dbs/Enterococcus_faecalis/alleles/gdh.tfa
• mlst_dbs/Enterococcus_faecalis/alleles/gki.tfa
• mlst_dbs/Enterococcus_faecalis/alleles/gyd.tfa
• mlst_dbs/Enterococcus_faecalis/alleles/pstS.tfa
• mlst_dbs/Enterococcus_faecalis/alleles/xpt.tfa
• mlst_dbs/Enterococcus_faecalis/alleles/yqiL.tfa
• mlst_dbs/Enterococcus_faecalis/profiles/efaecalis.txt
• mlst_dbs/Enterococcus_faecium/alleles/adk.tfa
• mlst_dbs/Enterococcus_faecium/alleles/atpA.tfa
• mlst_dbs/Enterococcus_faecium/alleles/ddl.tfa
• mlst_dbs/Enterococcus_faecium/alleles/gdh.tfa
• mlst_dbs/Enterococcus_faecium/alleles/gyd.tfa
• mlst_dbs/Enterococcus_faecium/alleles/pstS.tfa
• mlst_dbs/Enterococcus_faecium/alleles/purK.tfa
• mlst_dbs/Enterococcus_faecium/profiles/efaecium.txt
• mlst_dbs/Escherichia_coli_1/alleles/adk.tfa
• mlst_dbs/Escherichia_coli_1/alleles/fumC.tfa
• mlst_dbs/Escherichia_coli_1/alleles/gyrB.tfa
• mlst_dbs/Escherichia_coli_1/alleles/icd.tfa
• mlst_dbs/Escherichia_coli_1/alleles/mdh.tfa
• mlst_dbs/Escherichia_coli_1/alleles/purA.tfa
• mlst_dbs/Escherichia_coli_1/alleles/recA.tfa
• mlst_dbs/Escherichia_coli_1/profiles/ecoli.txt
• mlst_dbs/Escherichia_coli_2/alleles/dinB.tfa
• mlst_dbs/Escherichia_coli_2/alleles/icdA.tfa
• mlst_dbs/Escherichia_coli_2/alleles/pabB.tfa
• mlst_dbs/Escherichia_coli_2/alleles/polB.tfa
• mlst_dbs/Escherichia_coli_2/alleles/putP.tfa
• mlst_dbs/Escherichia_coli_2/alleles/trpA.tfa
• mlst_dbs/Escherichia_coli_2/alleles/trpB.tfa
• mlst_dbs/Escherichia_coli_2/alleles/uidA.tfa
• mlst_dbs/Escherichia_coli_2/profiles/ecoli_2.txt
• mlst_dbs/Flavobacterium_psychrophilum/alleles/atpA.tfa
• mlst_dbs/Flavobacterium_psychrophilum/alleles/dnaK.tfa
• mlst_dbs/Flavobacterium_psychrophilum/alleles/fumC.tfa
• mlst_dbs/Flavobacterium_psychrophilum/alleles/gyrB.tfa
• mlst_dbs/Flavobacterium_psychrophilum/alleles/murG.tfa
• mlst_dbs/Flavobacterium_psychrophilum/alleles/trpB.tfa
• mlst_dbs/Flavobacterium_psychrophilum/alleles/tuf.tfa
• mlst_dbs/Flavobacterium_psychrophilum/profiles/fpsychrophilum.txt
• mlst_dbs/Haemophilus_influenzae/alleles/adk.tfa
• mlst_dbs/Haemophilus_influenzae/alleles/atpG.tfa
• mlst_dbs/Haemophilus_influenzae/alleles/frdB.tfa
• mlst_dbs/Haemophilus_influenzae/alleles/fucK.tfa
• mlst_dbs/Haemophilus_influenzae/alleles/mdh.tfa
• mlst_dbs/Haemophilus_influenzae/alleles/pgi.tfa
• mlst_dbs/Haemophilus_influenzae/alleles/recA.tfa
• mlst_dbs/Haemophilus_influenzae/profiles/hinfluenzae.txt
• mlst_dbs/Haemophilus_parasuis/alleles/_6pgd.tfa
• mlst_dbs/Haemophilus_parasuis/alleles/atpD.tfa
• mlst_dbs/Haemophilus_parasuis/alleles/frdB.tfa
• mlst_dbs/Haemophilus_parasuis/alleles/g3pd.tfa
• mlst_dbs/Haemophilus_parasuis/alleles/infB.tfa
• mlst_dbs/Haemophilus_parasuis/alleles/mdh.tfa
• mlst_dbs/Haemophilus_parasuis/alleles/rpoB.tfa
• mlst_dbs/Haemophilus_parasuis/profiles/hparasuis.txt
• mlst_dbs/Helicobacter_cinaedi/alleles/_23S_rRNA.tfa
• mlst_dbs/Helicobacter_cinaedi/alleles/aroE.tfa
• mlst_dbs/Helicobacter_cinaedi/alleles/aspA.tfa
• mlst_dbs/Helicobacter_cinaedi/alleles/atpA.tfa
• mlst_dbs/Helicobacter_cinaedi/alleles/cdtB.tfa
• mlst_dbs/Helicobacter_cinaedi/alleles/ppa.tfa
• mlst_dbs/Helicobacter_cinaedi/alleles/tkt.tfa
• mlst_dbs/Helicobacter_cinaedi/profiles/hcinaedi.txt
• mlst_dbs/Helicobacter_pylori/alleles/atpA.tfa
• mlst_dbs/Helicobacter_pylori/alleles/efp.tfa
• mlst_dbs/Helicobacter_pylori/alleles/mutY.tfa
• mlst_dbs/Helicobacter_pylori/alleles/ppa.tfa
• mlst_dbs/Helicobacter_pylori/alleles/trpC.tfa
• mlst_dbs/Helicobacter_pylori/alleles/ureI.tfa
• mlst_dbs/Helicobacter_pylori/alleles/yphC.tfa
• mlst_dbs/Helicobacter_pylori/profiles/hpylori.txt
• mlst_dbs/Helicobacter_suis/alleles/atpA.tfa
• mlst_dbs/Helicobacter_suis/alleles/efp.tfa
• mlst_dbs/Helicobacter_suis/alleles/mutY.tfa
• mlst_dbs/Helicobacter_suis/alleles/ppa.tfa
• mlst_dbs/Helicobacter_suis/alleles/trpC.tfa
• mlst_dbs/Helicobacter_suis/alleles/ureAB.tfa
• mlst_dbs/Helicobacter_suis/alleles/yphC.tfa
• mlst_dbs/Helicobacter_suis/profiles/hsuis.txt
• mlst_dbs/Kingella_kingae/alleles/abcZ.tfa
• mlst_dbs/Kingella_kingae/alleles/adk.tfa
• mlst_dbs/Kingella_kingae/alleles/aroE.tfa
• mlst_dbs/Kingella_kingae/alleles/cpn60.tfa
• mlst_dbs/Kingella_kingae/alleles/gdh.tfa
• mlst_dbs/Kingella_kingae/alleles/recA.tfa
• mlst_dbs/Kingella_kingae/profiles/kkingae.txt
• mlst_dbs/Klebsiella_oxytoca/alleles/gapA.tfa
• mlst_dbs/Klebsiella_oxytoca/alleles/infB.tfa
• mlst_dbs/Klebsiella_oxytoca/alleles/mdh.tfa
• mlst_dbs/Klebsiella_oxytoca/alleles/pgi.tfa
• mlst_dbs/Klebsiella_oxytoca/alleles/phoE.tfa
• mlst_dbs/Klebsiella_oxytoca/alleles/rpoB.tfa
• mlst_dbs/Klebsiella_oxytoca/alleles/tonB.tfa
• mlst_dbs/Klebsiella_oxytoca/profiles/koxytoca.txt
• mlst_dbs/Klebsiella_pneumoniae/alleles/gapA.tfa
• mlst_dbs/Klebsiella_pneumoniae/alleles/infB.tfa
• mlst_dbs/Klebsiella_pneumoniae/alleles/mdh.tfa
• mlst_dbs/Klebsiella_pneumoniae/alleles/pgi.tfa
• mlst_dbs/Klebsiella_pneumoniae/alleles/phoE.tfa
• mlst_dbs/Klebsiella_pneumoniae/alleles/rpoB.tfa
• mlst_dbs/Klebsiella_pneumoniae/alleles/tonB.tfa
• mlst_dbs/Klebsiella_pneumoniae/profiles/kpneumoniae.txt
• mlst_dbs/Kudoa_septempunctata/alleles/cox1.tfa
• mlst_dbs/Kudoa_septempunctata/alleles/rnl.tfa
• mlst_dbs/Kudoa_septempunctata/profiles/kseptempunctata.txt
• mlst_dbs/Lactobacillus_salivarius/alleles/nrdB.tfa
• mlst_dbs/Lactobacillus_salivarius/alleles/parB.tfa
• mlst_dbs/Lactobacillus_salivarius/alleles/pstB.tfa
• mlst_dbs/Lactobacillus_salivarius/alleles/rpoA.tfa
• mlst_dbs/Lactobacillus_salivarius/alleles/rpsB.tfa
• mlst_dbs/Lactobacillus_salivarius/profiles/lsalivarius.txt
• mlst_dbs/Leptospira_spp/alleles/caiB.tfa
• mlst_dbs/Leptospira_spp/alleles/glmU.tfa
• mlst_dbs/Leptospira_spp/alleles/mreA.tfa
• mlst_dbs/Leptospira_spp/alleles/pfkB.tfa
• mlst_dbs/Leptospira_spp/alleles/pntA.tfa
• mlst_dbs/Leptospira_spp/alleles/sucA.tfa
• mlst_dbs/Leptospira_spp/alleles/tpiA.tfa
• mlst_dbs/Leptospira_spp/profiles/leptospira.txt
• mlst_dbs/Leptospira_spp__2/alleles/adk_2.tfa
• mlst_dbs/Leptospira_spp__2/alleles/glmU_2.tfa
• mlst_dbs/Leptospira_spp__2/alleles/icdA_2.tfa
• mlst_dbs/Leptospira_spp__2/alleles/lipL32_2.tfa
• mlst_dbs/Leptospira_spp__2/alleles/lipL41_2.tfa
• mlst_dbs/Leptospira_spp__2/alleles/mreA_2.tfa
• mlst_dbs/Leptospira_spp__2/alleles/pntA_2.tfa
• mlst_dbs/Leptospira_spp__2/profiles/leptospira_2.txt
• mlst_dbs/Leptospira_spp__3/alleles/adk_3.tfa
• mlst_dbs/Leptospira_spp__3/alleles/icdA_3.tfa
• mlst_dbs/Leptospira_spp__3/alleles/lipL32_3.tfa
• mlst_dbs/Leptospira_spp__3/alleles/lipL41_3.tfa
• mlst_dbs/Leptospira_spp__3/alleles/rrs2_3.tfa
• mlst_dbs/Leptospira_spp__3/alleles/secY_3.tfa
• mlst_dbs/Leptospira_spp__3/profiles/leptospira_3.txt
• mlst_dbs/Listeria_monocytogenes/alleles/abcZ.tfa
• mlst_dbs/Listeria_monocytogenes/alleles/bglA.tfa
• mlst_dbs/Listeria_monocytogenes/alleles/cat.tfa
• mlst_dbs/Listeria_monocytogenes/alleles/dapE.tfa
• mlst_dbs/Listeria_monocytogenes/alleles/dat.tfa
• mlst_dbs/Listeria_monocytogenes/alleles/ldh.tfa
• mlst_dbs/Listeria_monocytogenes/alleles/lhkA.tfa
• mlst_dbs/Listeria_monocytogenes/profiles/lmonocytogenes.txt
• mlst_dbs/Mannheimia_haemolytica/alleles/adk.tfa
• mlst_dbs/Mannheimia_haemolytica/alleles/aroE.tfa
• mlst_dbs/Mannheimia_haemolytica/alleles/deoD.tfa
• mlst_dbs/Mannheimia_haemolytica/alleles/gapDH.tfa
• mlst_dbs/Mannheimia_haemolytica/alleles/gnd.tfa
• mlst_dbs/Mannheimia_haemolytica/alleles/mdh.tfa
• mlst_dbs/Mannheimia_haemolytica/alleles/zwf.tfa
• mlst_dbs/Mannheimia_haemolytica/profiles/mhaemolytica.txt
• mlst_dbs/Melissococcus_plutonius/alleles/argE.tfa
• mlst_dbs/Melissococcus_plutonius/alleles/galK.tfa
• mlst_dbs/Melissococcus_plutonius/alleles/gbpB.tfa
• mlst_dbs/Melissococcus_plutonius/alleles/purR.tfa
• mlst_dbs/Melissococcus_plutonius/profiles/mplutonius.txt
• mlst_dbs/Moraxella_catarrhalis/alleles/abcZ.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/adk.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/efp.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/fumC.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/glyBETA.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/mutY.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/ppa.tfa
• mlst_dbs/Moraxella_catarrhalis/alleles/trpE.tfa
• mlst_dbs/Moraxella_catarrhalis/profiles/mcatarrhalis.txt
• mlst_dbs/Mycobacterium_abscessus/alleles/argH.tfa
• mlst_dbs/Mycobacterium_abscessus/alleles/cya.tfa
• mlst_dbs/Mycobacterium_abscessus/alleles/gnd.tfa
• mlst_dbs/Mycobacterium_abscessus/alleles/murC.tfa
• mlst_dbs/Mycobacterium_abscessus/alleles/pta.tfa
• mlst_dbs/Mycobacterium_abscessus/alleles/purH.tfa
• mlst_dbs/Mycobacterium_abscessus/alleles/rpoB.tfa
• mlst_dbs/Mycobacterium_abscessus/profiles/mabscessus.txt
• mlst_dbs/Mycobacterium_massiliense/alleles/argH.tfa
• mlst_dbs/Mycobacterium_massiliense/alleles/cya.tfa
• mlst_dbs/Mycobacterium_massiliense/alleles/gnd.tfa
• mlst_dbs/Mycobacterium_massiliense/alleles/murC.tfa
• mlst_dbs/Mycobacterium_massiliense/alleles/pta.tfa
• mlst_dbs/Mycobacterium_massiliense/alleles/purH.tfa
• mlst_dbs/Mycobacterium_massiliense/alleles/rpoB.tfa
• mlst_dbs/Mycobacterium_massiliense/profiles/mmassiliense.txt
• mlst_dbs/Mycoplasma_agalactiae/alleles/dnaA.tfa
• mlst_dbs/Mycoplasma_agalactiae/alleles/gltX.tfa
• mlst_dbs/Mycoplasma_agalactiae/alleles/gyrB.tfa
• mlst_dbs/Mycoplasma_agalactiae/alleles/metS.tfa
• mlst_dbs/Mycoplasma_agalactiae/alleles/tufA.tfa
• mlst_dbs/Mycoplasma_agalactiae/profiles/magalactiae.txt
• mlst_dbs/Mycoplasma_bovis/alleles/adh1.tfa
• mlst_dbs/Mycoplasma_bovis/alleles/gltX.tfa
• mlst_dbs/Mycoplasma_bovis/alleles/gpsA.tfa
• mlst_dbs/Mycoplasma_bovis/alleles/gyrB.tfa
• mlst_dbs/Mycoplasma_bovis/alleles/pta2.tfa
• mlst_dbs/Mycoplasma_bovis/alleles/tdk.tfa
• mlst_dbs/Mycoplasma_bovis/alleles/tkt.tfa
• mlst_dbs/Mycoplasma_bovis/profiles/mbovis.txt
• mlst_dbs/Mycoplasma_hyopneumoniae/alleles/adk.tfa
• mlst_dbs/Mycoplasma_hyopneumoniae/alleles/rpoB.tfa
• mlst_dbs/Mycoplasma_hyopneumoniae/alleles/tpiA.tfa
• mlst_dbs/Mycoplasma_hyopneumoniae/profiles/mhyopneumoniae.txt
• mlst_dbs/Mycoplasma_hyorhinis/alleles/adk.tfa
• mlst_dbs/Mycoplasma_hyorhinis/alleles/dnaA.tfa
• mlst_dbs/Mycoplasma_hyorhinis/alleles/gltX.tfa
• mlst_dbs/Mycoplasma_hyorhinis/alleles/gmk.tfa
• mlst_dbs/Mycoplasma_hyorhinis/alleles/gyrB.tfa
• mlst_dbs/Mycoplasma_hyorhinis/alleles/rpoB.tfa
• mlst_dbs/Mycoplasma_hyorhinis/profiles/mhyorhinis.txt
• mlst_dbs/Mycoplasma_pneumoniae/alleles/adk.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/arcC.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/atpA.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/glyA.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/gmk.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/gyrB.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/pgm.tfa
• mlst_dbs/Mycoplasma_pneumoniae/alleles/ppa.tfa
• mlst_dbs/Mycoplasma_pneumoniae/profiles/mpneumoniae.txt
• mlst_dbs/Neisseria_spp/alleles/abcZ.tfa
• mlst_dbs/Neisseria_spp/alleles/adk.tfa
• mlst_dbs/Neisseria_spp/alleles/aroE.tfa
• mlst_dbs/Neisseria_spp/alleles/fumC.tfa
• mlst_dbs/Neisseria_spp/alleles/gdh.tfa
• mlst_dbs/Neisseria_spp/alleles/pdhC.tfa
• mlst_dbs/Neisseria_spp/alleles/pgm.tfa
• mlst_dbs/Neisseria_spp/profiles/neisseria.txt
• mlst_dbs/Orientia_tsutsugamushi/alleles/gpsA.tfa
• mlst_dbs/Orientia_tsutsugamushi/alleles/mdh.tfa
• mlst_dbs/Orientia_tsutsugamushi/alleles/nrdF.tfa
• mlst_dbs/Orientia_tsutsugamushi/alleles/nuoF.tfa
• mlst_dbs/Orientia_tsutsugamushi/alleles/ppdK.tfa
• mlst_dbs/Orientia_tsutsugamushi/alleles/sucB.tfa
• mlst_dbs/Orientia_tsutsugamushi/alleles/sucD.tfa
• mlst_dbs/Orientia_tsutsugamushi/profiles/otsutsugamushi.txt
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/adk.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/aroE.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/fumC.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/gdhA.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/mdh.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/pgi.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/alleles/pmi.tfa
• mlst_dbs/Ornithobacterium_rhinotracheale/profiles/orhinotracheale.txt
• mlst_dbs/Paenibacillus_larvae/alleles/Natrans.tfa
• mlst_dbs/Paenibacillus_larvae/alleles/clpC.tfa
• mlst_dbs/Paenibacillus_larvae/alleles/ftsA.tfa
• mlst_dbs/Paenibacillus_larvae/alleles/glpF.tfa
• mlst_dbs/Paenibacillus_larvae/alleles/glpT.tfa
• mlst_dbs/Paenibacillus_larvae/alleles/rpoB.tfa
• mlst_dbs/Paenibacillus_larvae/alleles/sigF.tfa
• mlst_dbs/Paenibacillus_larvae/profiles/plarvae.txt
• mlst_dbs/Pasteurella_multocida_1/alleles/adk.tfa
• mlst_dbs/Pasteurella_multocida_1/alleles/est.tfa
• mlst_dbs/Pasteurella_multocida_1/alleles/gdh.tfa
• mlst_dbs/Pasteurella_multocida_1/alleles/mdh.tfa
• mlst_dbs/Pasteurella_multocida_1/alleles/pgi.tfa
• mlst_dbs/Pasteurella_multocida_1/alleles/pmi.tfa
• mlst_dbs/Pasteurella_multocida_1/alleles/zwf.tfa
• mlst_dbs/Pasteurella_multocida_1/profiles/pmultocida_rirdc.txt
• mlst_dbs/Pasteurella_multocida_2/alleles/adk.tfa
• mlst_dbs/Pasteurella_multocida_2/alleles/aroA.tfa
• mlst_dbs/Pasteurella_multocida_2/alleles/deoD.tfa
• mlst_dbs/Pasteurella_multocida_2/alleles/g6pd.tfa
• mlst_dbs/Pasteurella_multocida_2/alleles/gdhA.tfa
• mlst_dbs/Pasteurella_multocida_2/alleles/mdh.tfa
• mlst_dbs/Pasteurella_multocida_2/alleles/pgi.tfa
• mlst_dbs/Pasteurella_multocida_2/profiles/pmultocida_multihost.txt
• mlst_dbs/Pediococcus_pentosaceus/alleles/dalR.tfa
• mlst_dbs/Pediococcus_pentosaceus/alleles/glnA.tfa
• mlst_dbs/Pediococcus_pentosaceus/alleles/gyrB.tfa
• mlst_dbs/Pediococcus_pentosaceus/alleles/leuS.tfa
• mlst_dbs/Pediococcus_pentosaceus/alleles/pgI.tfa
• mlst_dbs/Pediococcus_pentosaceus/alleles/pgm.tfa
• mlst_dbs/Pediococcus_pentosaceus/alleles/pyc.tfa
• mlst_dbs/Pediococcus_pentosaceus/profiles/ppentosaceus.txt
• mlst_dbs/Photobacterium_damselae/alleles/glpF.tfa
• mlst_dbs/Photobacterium_damselae/alleles/gyrB.tfa
• mlst_dbs/Photobacterium_damselae/alleles/metG.tfa
• mlst_dbs/Photobacterium_damselae/alleles/pntA.tfa
• mlst_dbs/Photobacterium_damselae/alleles/pyrC.tfa
• mlst_dbs/Photobacterium_damselae/alleles/toxR.tfa
• mlst_dbs/Photobacterium_damselae/profiles/pdamselae.txt
• mlst_dbs/Porphyromonas_gingivalis/alleles/ftsQ.tfa
• mlst_dbs/Porphyromonas_gingivalis/alleles/gpdxJ.tfa
• mlst_dbs/Porphyromonas_gingivalis/alleles/hagB.tfa
• mlst_dbs/Porphyromonas_gingivalis/alleles/mcmA.tfa
• mlst_dbs/Porphyromonas_gingivalis/alleles/pepO.tfa
• mlst_dbs/Porphyromonas_gingivalis/alleles/pga.tfa
• mlst_dbs/Porphyromonas_gingivalis/alleles/recA.tfa
• mlst_dbs/Porphyromonas_gingivalis/profiles/pgingivalis.txt
• mlst_dbs/Propionibacterium_acnes/alleles/CAMP2.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/aroE.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/atpD.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/gmk.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/guaA.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/lepA.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/sodA.tfa
• mlst_dbs/Propionibacterium_acnes/alleles/tly.tfa
• mlst_dbs/Propionibacterium_acnes/profiles/pacnes.txt
• mlst_dbs/Pseudomonas_aeruginosa/alleles/acs.tfa
• mlst_dbs/Pseudomonas_aeruginosa/alleles/aro.tfa
• mlst_dbs/Pseudomonas_aeruginosa/alleles/gua.tfa
• mlst_dbs/Pseudomonas_aeruginosa/alleles/mut.tfa
• mlst_dbs/Pseudomonas_aeruginosa/alleles/nuo.tfa
• mlst_dbs/Pseudomonas_aeruginosa/alleles/pps.tfa
• mlst_dbs/Pseudomonas_aeruginosa/alleles/trp.tfa
• mlst_dbs/Pseudomonas_aeruginosa/profiles/paeruginosa.txt
• mlst_dbs/Pseudomonas_fluorescens/alleles/glnS.tfa
• mlst_dbs/Pseudomonas_fluorescens/alleles/gyrB.tfa
• mlst_dbs/Pseudomonas_fluorescens/alleles/ileS.tfa
• mlst_dbs/Pseudomonas_fluorescens/alleles/nuoD.tfa
• mlst_dbs/Pseudomonas_fluorescens/alleles/recA.tfa
• mlst_dbs/Pseudomonas_fluorescens/alleles/rpoB.tfa
• mlst_dbs/Pseudomonas_fluorescens/alleles/rpoD.tfa
• mlst_dbs/Pseudomonas_fluorescens/profiles/pfluorescens.txt
• mlst_dbs/Riemerella_anatipestifer/alleles/dnaB.tfa
• mlst_dbs/Riemerella_anatipestifer/alleles/gluD.tfa
• mlst_dbs/Riemerella_anatipestifer/alleles/gpi.tfa
• mlst_dbs/Riemerella_anatipestifer/alleles/groEL.tfa
• mlst_dbs/Riemerella_anatipestifer/alleles/gyrA.tfa
• mlst_dbs/Riemerella_anatipestifer/alleles/mdh.tfa
• mlst_dbs/Riemerella_anatipestifer/alleles/rpoB.tfa
• mlst_dbs/Riemerella_anatipestifer/profiles/ranatipestifer.txt
• mlst_dbs/Salmonella_enterica/alleles/aroC.tfa
• mlst_dbs/Salmonella_enterica/alleles/dnaN.tfa
• mlst_dbs/Salmonella_enterica/alleles/hemD.tfa
• mlst_dbs/Salmonella_enterica/alleles/hisD.tfa
• mlst_dbs/Salmonella_enterica/alleles/purE.tfa
• mlst_dbs/Salmonella_enterica/alleles/sucA.tfa
• mlst_dbs/Salmonella_enterica/alleles/thrA.tfa
• mlst_dbs/Salmonella_enterica/profiles/senterica.txt
• mlst_dbs/Sinorhizobium_spp/alleles/asd.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/edd.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/gap.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/glnD.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/gnd.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/nuoE1.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/ordL2.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/recA.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/sucA.tfa
• mlst_dbs/Sinorhizobium_spp/alleles/zwf.tfa
• mlst_dbs/Sinorhizobium_spp/profiles/sinorhizobium.txt
• mlst_dbs/Staphylococcus_aureus/alleles/arcC.tfa
• mlst_dbs/Staphylococcus_aureus/alleles/aroE.tfa
• mlst_dbs/Staphylococcus_aureus/alleles/glpF.tfa
• mlst_dbs/Staphylococcus_aureus/alleles/gmk.tfa
• mlst_dbs/Staphylococcus_aureus/alleles/pta.tfa
• mlst_dbs/Staphylococcus_aureus/alleles/tpi.tfa
• mlst_dbs/Staphylococcus_aureus/alleles/yqiL.tfa
• mlst_dbs/Staphylococcus_aureus/profiles/saureus.txt
• mlst_dbs/Staphylococcus_epidermidis/alleles/arcC.tfa
• mlst_dbs/Staphylococcus_epidermidis/alleles/aroE.tfa
• mlst_dbs/Staphylococcus_epidermidis/alleles/gtr.tfa
• mlst_dbs/Staphylococcus_epidermidis/alleles/mutS.tfa
• mlst_dbs/Staphylococcus_epidermidis/alleles/pyrR.tfa
• mlst_dbs/Staphylococcus_epidermidis/alleles/tpiA.tfa
• mlst_dbs/Staphylococcus_epidermidis/alleles/yqiL.tfa
• mlst_dbs/Staphylococcus_epidermidis/profiles/sepidermidis.txt
• mlst_dbs/Staphylococcus_haemolyticus/alleles/Ribose_ABC.tfa
• mlst_dbs/Staphylococcus_haemolyticus/alleles/SH1431.tfa
• mlst_dbs/Staphylococcus_haemolyticus/alleles/SH_1200.tfa
• mlst_dbs/Staphylococcus_haemolyticus/alleles/arcC.tfa
• mlst_dbs/Staphylococcus_haemolyticus/alleles/cfxE.tfa
• mlst_dbs/Staphylococcus_haemolyticus/alleles/hemH.tfa
• mlst_dbs/Staphylococcus_haemolyticus/alleles/leuB.tfa
• mlst_dbs/Staphylococcus_haemolyticus/profiles/shaemolyticus.txt
• mlst_dbs/Staphylococcus_lugdunensis/alleles/aroE.tfa
• mlst_dbs/Staphylococcus_lugdunensis/alleles/dat.tfa
• mlst_dbs/Staphylococcus_lugdunensis/alleles/ddl.tfa
• mlst_dbs/Staphylococcus_lugdunensis/alleles/gmk.tfa
• mlst_dbs/Staphylococcus_lugdunensis/alleles/ldh.tfa
• mlst_dbs/Staphylococcus_lugdunensis/alleles/recA.tfa
• mlst_dbs/Staphylococcus_lugdunensis/alleles/yqiL.tfa
• mlst_dbs/Staphylococcus_lugdunensis/profiles/slugdunensis.txt
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/ack.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/cpn60.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/fdh.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/pta.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/purA.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/sar.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/alleles/tuf.tfa
• mlst_dbs/Staphylococcus_pseudintermedius/profiles/spseudintermedius.txt
• mlst_dbs/Stapylococcus_hominis/alleles/arcC.tfa
• mlst_dbs/Stapylococcus_hominis/alleles/glpK.tfa
• mlst_dbs/Stapylococcus_hominis/alleles/gtr.tfa
• mlst_dbs/Stapylococcus_hominis/alleles/pta.tfa
• mlst_dbs/Stapylococcus_hominis/alleles/tpiA.tfa
• mlst_dbs/Stapylococcus_hominis/alleles/tuf.tfa
• mlst_dbs/Stapylococcus_hominis/profiles/shominis.txt
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/atpD.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/gapA.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/guaA.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/mutM.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/nuoD.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/ppsA.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/alleles/recA.tfa
• mlst_dbs/Stenotrophomonas_maltophilia/profiles/smaltophilia.txt
• mlst_dbs/Streptococcus_agalactiae/alleles/adhP.tfa
• mlst_dbs/Streptococcus_agalactiae/alleles/atr.tfa
• mlst_dbs/Streptococcus_agalactiae/alleles/glcK.tfa
• mlst_dbs/Streptococcus_agalactiae/alleles/glnA.tfa
• mlst_dbs/Streptococcus_agalactiae/alleles/pheS.tfa
• mlst_dbs/Streptococcus_agalactiae/alleles/sdhA.tfa
• mlst_dbs/Streptococcus_agalactiae/alleles/tkt.tfa
• mlst_dbs/Streptococcus_agalactiae/profiles/sagalactiae.txt
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/ddl.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/gki.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/glnA.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/mutS.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/mutS2.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/pheS.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/proS.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/pyrE.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/thrS.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/alleles/tpi.tfa
• mlst_dbs/Streptococcus_bovis_equinus_complex__SBSEC_/profiles/sbsec.txt
• mlst_dbs/Streptococcus_canis/alleles/gki.tfa
• mlst_dbs/Streptococcus_canis/alleles/gtr.tfa
• mlst_dbs/Streptococcus_canis/alleles/murI.tfa
• mlst_dbs/Streptococcus_canis/alleles/mutS.tfa
• mlst_dbs/Streptococcus_canis/alleles/recP.tfa
• mlst_dbs/Streptococcus_canis/alleles/xpt.tfa
• mlst_dbs/Streptococcus_canis/alleles/yqiZ.tfa
• mlst_dbs/Streptococcus_canis/profiles/scanis.txt
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/atoB.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/gki.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/gtr.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/murI.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/mutS.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/recP.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/alleles/xpt.tfa
• mlst_dbs/Streptococcus_dysgalactiae_equisimilis/profiles/sdysgalactiae.txt
• mlst_dbs/Streptococcus_gallolyticus/alleles/aroE.tfa
• mlst_dbs/Streptococcus_gallolyticus/alleles/glgB.tfa
• mlst_dbs/Streptococcus_gallolyticus/alleles/nifS.tfa
• mlst_dbs/Streptococcus_gallolyticus/alleles/p20.tfa
• mlst_dbs/Streptococcus_gallolyticus/alleles/tkt.tfa
• mlst_dbs/Streptococcus_gallolyticus/alleles/trpD.tfa
• mlst_dbs/Streptococcus_gallolyticus/alleles/uvrA.tfa
• mlst_dbs/Streptococcus_gallolyticus/profiles/sgallolyticus.txt
• mlst_dbs/Streptococcus_oralis/alleles/aroE.tfa
• mlst_dbs/Streptococcus_oralis/alleles/ddl.tfa
• mlst_dbs/Streptococcus_oralis/alleles/gdh.tfa
• mlst_dbs/Streptococcus_oralis/alleles/gki.tfa
• mlst_dbs/Streptococcus_oralis/alleles/hexB.tfa
• mlst_dbs/Streptococcus_oralis/alleles/recP.tfa
• mlst_dbs/Streptococcus_oralis/alleles/xpt.tfa
• mlst_dbs/Streptococcus_oralis/profiles/soralis.txt
• mlst_dbs/Streptococcus_pneumoniae/alleles/aroE.tfa
• mlst_dbs/Streptococcus_pneumoniae/alleles/ddl.tfa
• mlst_dbs/Streptococcus_pneumoniae/alleles/gdh.tfa
• mlst_dbs/Streptococcus_pneumoniae/alleles/gki.tfa
• mlst_dbs/Streptococcus_pneumoniae/alleles/recP.tfa
• mlst_dbs/Streptococcus_pneumoniae/alleles/spi.tfa
• mlst_dbs/Streptococcus_pneumoniae/alleles/xpt.tfa
• mlst_dbs/Streptococcus_pneumoniae/profiles/spneumoniae.txt
• mlst_dbs/Streptococcus_pyogenes/alleles/gki.tfa
• mlst_dbs/Streptococcus_pyogenes/alleles/gtr.tfa
• mlst_dbs/Streptococcus_pyogenes/alleles/murI.tfa
• mlst_dbs/Streptococcus_pyogenes/alleles/mutS.tfa
• mlst_dbs/Streptococcus_pyogenes/alleles/recP.tfa
• mlst_dbs/Streptococcus_pyogenes/alleles/xpt.tfa
• mlst_dbs/Streptococcus_pyogenes/alleles/yqiL.tfa
• mlst_dbs/Streptococcus_pyogenes/profiles/spyogenes.txt
• mlst_dbs/Streptococcus_suis/alleles/aroA.tfa
• mlst_dbs/Streptococcus_suis/alleles/cpn60.tfa
• mlst_dbs/Streptococcus_suis/alleles/dpr.tfa
• mlst_dbs/Streptococcus_suis/alleles/gki.tfa
• mlst_dbs/Streptococcus_suis/alleles/mutS.tfa
• mlst_dbs/Streptococcus_suis/alleles/recA.tfa
• mlst_dbs/Streptococcus_suis/alleles/thrA.tfa
• mlst_dbs/Streptococcus_suis/profiles/ssuis.txt
• mlst_dbs/Streptococcus_thermophilus/alleles/ddlA.tfa
• mlst_dbs/Streptococcus_thermophilus/alleles/glcK.tfa
• mlst_dbs/Streptococcus_thermophilus/alleles/proA.tfa
• mlst_dbs/Streptococcus_thermophilus/alleles/ptsI.tfa
• mlst_dbs/Streptococcus_thermophilus/alleles/serB.tfa
• mlst_dbs/Streptococcus_thermophilus/alleles/tkt.tfa
• mlst_dbs/Streptococcus_thermophilus/profiles/sthermophilus.txt
• mlst_dbs/Streptococcus_thermophilus_2/alleles/carB.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/clpX.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/dnaA.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/murC.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/murE.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/pepN.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/pepX.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/pyrG.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/recA.tfa
• mlst_dbs/Streptococcus_thermophilus_2/alleles/rpoB.tfa
• mlst_dbs/Streptococcus_thermophilus_2/profiles/sthermophilus_2.txt
• mlst_dbs/Streptococcus_uberis/alleles/arcC.tfa
• mlst_dbs/Streptococcus_uberis/alleles/ddl.tfa
• mlst_dbs/Streptococcus_uberis/alleles/gki.tfa
• mlst_dbs/Streptococcus_uberis/alleles/recP.tfa
• mlst_dbs/Streptococcus_uberis/alleles/tdk.tfa
• mlst_dbs/Streptococcus_uberis/alleles/tpi.tfa
• mlst_dbs/Streptococcus_uberis/alleles/yqiL.tfa
• mlst_dbs/Streptococcus_uberis/profiles/suberis.txt
• mlst_dbs/Streptococcus_zooepidemicus/alleles/arcC.tfa
• mlst_dbs/Streptococcus_zooepidemicus/alleles/nrdE.tfa
• mlst_dbs/Streptococcus_zooepidemicus/alleles/proS.tfa
• mlst_dbs/Streptococcus_zooepidemicus/alleles/spi.tfa
• mlst_dbs/Streptococcus_zooepidemicus/alleles/tdk.tfa
• mlst_dbs/Streptococcus_zooepidemicus/alleles/tpi.tfa
• mlst_dbs/Streptococcus_zooepidemicus/alleles/yqiL.tfa
• mlst_dbs/Streptococcus_zooepidemicus/profiles/szooepidemicus.txt
• mlst_dbs/Streptomyces_spp/alleles/_16S.tfa
• mlst_dbs/Streptomyces_spp/alleles/atpD.tfa
• mlst_dbs/Streptomyces_spp/alleles/gyrB.tfa
• mlst_dbs/Streptomyces_spp/alleles/recA.tfa
• mlst_dbs/Streptomyces_spp/alleles/rpoB.tfa
• mlst_dbs/Streptomyces_spp/alleles/trpB.tfa
• mlst_dbs/Streptomyces_spp/profiles/streptomyces.txt
• mlst_dbs/Taylorella_spp/alleles/adk.tfa
• mlst_dbs/Taylorella_spp/alleles/fh.tfa
• mlst_dbs/Taylorella_spp/alleles/gltA.tfa
• mlst_dbs/Taylorella_spp/alleles/gyrB.tfa
• mlst_dbs/Taylorella_spp/alleles/shmt.tfa
• mlst_dbs/Taylorella_spp/alleles/txn.tfa
• mlst_dbs/Taylorella_spp/alleles/tyrB.tfa
• mlst_dbs/Taylorella_spp/profiles/taylorella.txt
• mlst_dbs/Tenacibaculum_spp/alleles/atpA.tfa
• mlst_dbs/Tenacibaculum_spp/alleles/dnaK.tfa
• mlst_dbs/Tenacibaculum_spp/alleles/glyA.tfa
• mlst_dbs/Tenacibaculum_spp/alleles/gyrB.tfa
• mlst_dbs/Tenacibaculum_spp/alleles/infB.tfa
• mlst_dbs/Tenacibaculum_spp/alleles/rlmN.tfa
• mlst_dbs/Tenacibaculum_spp/alleles/tgt.tfa
• mlst_dbs/Tenacibaculum_spp/profiles/tenacibaculum.txt
• mlst_dbs/Trichomonas_vaginalis/alleles/ALTS.tfa
• mlst_dbs/Trichomonas_vaginalis/alleles/DMRP.tfa
• mlst_dbs/Trichomonas_vaginalis/alleles/FT2A.tfa
• mlst_dbs/Trichomonas_vaginalis/alleles/GLUT.tfa
• mlst_dbs/Trichomonas_vaginalis/alleles/M6PI.tfa
• mlst_dbs/Trichomonas_vaginalis/alleles/SHMT.tfa
• mlst_dbs/Trichomonas_vaginalis/alleles/TRYP.tfa
• mlst_dbs/Trichomonas_vaginalis/profiles/tvaginalis.txt
• mlst_dbs/Vibrio_cholerae/alleles/adk.tfa
• mlst_dbs/Vibrio_cholerae/alleles/gyrB.tfa
• mlst_dbs/Vibrio_cholerae/alleles/mdh.tfa
• mlst_dbs/Vibrio_cholerae/alleles/metE.tfa
• mlst_dbs/Vibrio_cholerae/alleles/pntA.tfa
• mlst_dbs/Vibrio_cholerae/alleles/purM.tfa
• mlst_dbs/Vibrio_cholerae/alleles/pyrC.tfa
• mlst_dbs/Vibrio_cholerae/profiles/vcholerae.txt
• mlst_dbs/Vibrio_parahaemolyticus/alleles/dnaE.tfa
• mlst_dbs/Vibrio_parahaemolyticus/alleles/dtdS.tfa
• mlst_dbs/Vibrio_parahaemolyticus/alleles/gyrB.tfa
• mlst_dbs/Vibrio_parahaemolyticus/alleles/pntA.tfa
• mlst_dbs/Vibrio_parahaemolyticus/alleles/pyrC.tfa
• mlst_dbs/Vibrio_parahaemolyticus/alleles/recA.tfa
• mlst_dbs/Vibrio_parahaemolyticus/alleles/tnaA.tfa
• mlst_dbs/Vibrio_parahaemolyticus/profiles/vparahaemolyticus.txt
• mlst_dbs/Vibrio_spp/alleles/atpA.tfa
• mlst_dbs/Vibrio_spp/alleles/gyrB.tfa
• mlst_dbs/Vibrio_spp/alleles/pyrH.tfa
• mlst_dbs/Vibrio_spp/alleles/recA.tfa
• mlst_dbs/Vibrio_spp/profiles/vibrio.txt
• mlst_dbs/Vibrio_tapetis/alleles/atpA.tfa
• mlst_dbs/Vibrio_tapetis/alleles/fstZ.tfa
• mlst_dbs/Vibrio_tapetis/alleles/gapA.tfa
• mlst_dbs/Vibrio_tapetis/alleles/hsp60.tfa
• mlst_dbs/Vibrio_tapetis/alleles/pyrH.tfa
• mlst_dbs/Vibrio_tapetis/alleles/rctB.tfa
• mlst_dbs/Vibrio_tapetis/alleles/recA.tfa
• mlst_dbs/Vibrio_tapetis/alleles/rpoA.tfa
• mlst_dbs/Vibrio_tapetis/alleles/rpoD.tfa
• mlst_dbs/Vibrio_tapetis/alleles/topA.tfa
• mlst_dbs/Vibrio_tapetis/profiles/vtapetis.txt
• mlst_dbs/Vibrio_vulnificus/alleles/dtdS.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/glp.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/gyrB.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/lysA.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/mdh.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/metG.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/pntA.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/purM.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/pyrC.tfa
• mlst_dbs/Vibrio_vulnificus/alleles/tnaA.tfa
• mlst_dbs/Vibrio_vulnificus/profiles/vvulnificus.txt
• mlst_dbs/Wolbachia/alleles/coxA.tfa
• mlst_dbs/Wolbachia/alleles/fbpA.tfa
• mlst_dbs/Wolbachia/alleles/ftsZ.tfa
• mlst_dbs/Wolbachia/alleles/gatB.tfa
• mlst_dbs/Wolbachia/alleles/hcpA.tfa
• mlst_dbs/Wolbachia/profiles/wolbachia.txt
• mlst_dbs/Xylella_fastidiosa/alleles/cysG.tfa
• mlst_dbs/Xylella_fastidiosa/alleles/gltT.tfa
• mlst_dbs/Xylella_fastidiosa/alleles/holC.tfa
• mlst_dbs/Xylella_fastidiosa/alleles/leuA.tfa
• mlst_dbs/Xylella_fastidiosa/alleles/malF.tfa
• mlst_dbs/Xylella_fastidiosa/alleles/nuoL.tfa
• mlst_dbs/Xylella_fastidiosa/alleles/petC.tfa
• mlst_dbs/Xylella_fastidiosa/profiles/xfastidiosa.txt
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/adk.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/argA.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/aroA.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/glnA.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/thrA.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/tmk.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/alleles/trpE.tfa
• mlst_dbs/Yersinia_pseudotuberculosis/profiles/ypseudotuberculosis.txt
• mlst_dbs/Yersinia_ruckeri/alleles/dnaJ.tfa
• mlst_dbs/Yersinia_ruckeri/alleles/glnA.tfa
• mlst_dbs/Yersinia_ruckeri/alleles/gyrB.tfa
• mlst_dbs/Yersinia_ruckeri/alleles/hsp60.tfa
• mlst_dbs/Yersinia_ruckeri/alleles/recA.tfa
• mlst_dbs/Yersinia_ruckeri/alleles/thrA.tfa
• mlst_dbs/Yersinia_ruckeri/profiles/yruckeri.txt
• mlst_dbs/Yersinia_spp/alleles/aarF.tfa
• mlst_dbs/Yersinia_spp/alleles/dfp.tfa
• mlst_dbs/Yersinia_spp/alleles/galR.tfa
• mlst_dbs/Yersinia_spp/alleles/glnS.tfa
• mlst_dbs/Yersinia_spp/alleles/hemA.tfa
• mlst_dbs/Yersinia_spp/alleles/rfaE.tfa
• mlst_dbs/Yersinia_spp/alleles/speA.tfa
• mlst_dbs/Yersinia_spp/profiles/yersinia.txt
• t/00-report-prereqs.dd
• t/00-report-prereqs.t
• t/Blast/BlastN.t
• t/Blast/Database.t
• t/CDC/Convert.t
• t/Download/Database.t
• t/Download/Database_fails.t
• t/Download/Database_succeeds.t
• t/Download/Databases.t
• t/FilterAlleles.t
• t/Input/NormaliseFasta.t
• t/Output/Databases.t
• t/Output/MultipleFastas.t
• t/Output/MultipleSpecies.t
• t/Output/OutputFasta.t
• t/Output/SpreadsheetRow.t
• t/Overall/CheckAllModulesCompile.t
• t/SequenceTypes/CompareAlleles.t
• t/SequenceTypes/SearchForFiles.t
• t/SequenceTypes/SequenceType.t
• t/Settings/DatabaseSettings.t
• t/Validate/Executable.t
• t/data/CDC_emmST_partial.tfa
• t/data/Pediococcus_pentosaceus_filtering.xml
• t/data/Streptococcus_pyogenes_emmST_contigs.fa
• t/data/Streptococcus_pyogenes_emmST_unknown.fa
• t/data/abc.fas
• t/data/adk.tfa
• t/data/adk_99_percent.tfa
• t/data/adk_contamination.tfa
• t/data/adk_imperfect.tfa
• t/data/adk_imperfect_contamination.tfa
• t/data/adk_less_than_95_percent.tfa
• t/data/adk_top_hit_low_hit.tfa
• t/data/adk_truncation.tfa
• t/data/adk_two_imperfect_contamination.tfa
• t/data/bbb.fas
• t/data/bordetella.txt
• t/data/ccc.fas
• t/data/contigs.fa
• t/data/contigs_check_concat_allele_order.fa
• t/data/contigs_missing_locus.fa
• t/data/contigs_near_match.fa
• t/data/contigs_novel.fa
• t/data/contigs_one_unknown.tfa
• t/data/contigs_pipe_character_in_seq_name.fa
• t/data/databases/Escherichia_coli_1/alleles/adk.tfa
• t/data/databases/Escherichia_coli_1/alleles/purA.tfa
• t/data/databases/Escherichia_coli_1/alleles/recA.tfa
• t/data/databases/Escherichia_coli_1/profiles/escherichia_coli.txt
• t/data/databases/Helicobacter_pylori/alleles/atpA.tfa
• t/data/databases/Helicobacter_pylori/alleles/efp.tfa
• t/data/databases/Helicobacter_pylori/alleles/mutY.tfa
• t/data/databases/Helicobacter_pylori/profiles/hpylori.txt
• t/data/databases/Streptococcus_pyogenes/profiles/spyogenes.txt
• t/data/databases/Streptococcus_pyogenes_emmST/alleles/emmST.tfa
• t/data/databases/Streptococcus_pyogenes_emmST/profiles/Streptococcus_pyogenes_emmST.txt
• t/data/ddd.fas
• t/data/eee.fas
• t/data/efg.fas
• t/data/expected_Streptococcus_pyogenes_emmST.allele.csv
• t/data/expected_Streptococcus_pyogenes_emmST.genomic.csv
• t/data/expected_Streptococcus_pyogenes_emmST_alleles.fa
• t/data/expected_Streptococcus_pyogenes_emmST_alleles_with_unknown.fa
• t/data/expected_concatenated_alleles.fa
• t/data/expected_mlst_results.allele.csv
• t/data/expected_mlst_results.genomic.csv
• t/data/expected_multi_mlst_results.allele.csv
• t/data/expected_multi_mlst_results.genomic.csv
• t/data/expected_sorted_concatenated_alleles.fa
• t/data/expected_sorted_mlst_results.allele.csv
• t/data/expected_sorted_mlst_results.genomic.csv
• t/data/expected_three_concatenated_alleles.fa
• t/data/expected_three_concatenated_alleles.phylip
• t/data/expected_three_contigs_one_unknown.unknown_allele.adk-2~.fa
• t/data/expected_three_contigs_one_unknown.unknown_allele.recA-1~.fa
• t/data/expected_three_mlst_best_results.allele.csv
• t/data/expected_three_mlst_best_results.genomic.csv
• t/data/expected_three_mlst_results.allele.csv
• t/data/expected_three_mlst_results.genomic.csv
• t/data/expected_two_concatenated_alleles.fa
• t/data/expected_two_mlst_results.allele.csv
• t/data/expected_two_mlst_results.genomic.csv
• t/data/fake_executables/another_executable.sh
• t/data/fake_executables/executable.sh
• t/data/fake_executables/not_executable.sh
• t/data/gdh_fake_blast_output.sh
• t/data/homo_sapiens.txt
• t/data/missing_web_database.xml
• t/data/overall_databases.xml
• t/data/purA.tfa
• t/data/recA.tfa
• t/requires_external.t
• weaver.ini
• xt/author/00-compile.t
• xt/author/pod-syntax.t